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POMC, PCSK1, or LEPR Deficiency

Disease/Condition(s): LEPR Deficiency, PCSK1 Deficiency, POMC Deficiency
What is POMC, PCSK1, or LEPR Deficiency?

POMC, PCSK1, and LEPR deficiencies are rare genetic disorders that impair the normal function of the melanocortin-4 receptor (MC4R) pathway, crucial for regulating hunger and energy balance. Mutations in these genes lead to abnormal signaling in this pathway, resulting in severe early-onset obesity and an insatiable appetite. These conditions are characterized by their resistance to typical obesity treatments, making specific therapies like Imcivree (setmelanotide) necessary to manage symptoms effectively by targeting the underlying genetic abnormalities.

POMC, PCSK1, or LEPR Deficiency Sponsored Testing Program Overview:

POMC/PCSK1/LEPR Companion Diagnostic (CDx) Panel

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What is the role of testing for POMC, PCSK1, or LEPR Deficiency?

The POMC/PCSK1/LEPR CDx Panel is a next generation sequencing (NGS)-based in vitro diagnostic test that analyzes genomic DNA isolated from blood or saliva. Specimens used with the test are K2EDTA blood collected using certain indicated K2EDTA blood collection devices and saliva collected using ORAcollect-Dx™ OCD 100 devices. The test detects germline nucleotide substitutions, short insertions and deletions, and copy number variants (CNVs) within the following 3 genes:

  • Pro-opiomelanocortin (POMC)
  • Proprotein Convertase Subtilisin/Kexin type 1 (PCSK1)
  • Leptin Receptor (LEPR)

The test is a companion diagnostic device intended to select adult and pediatric patients 6 years of age and older who have obesity and certain variants in POMC, PCSK1, or LEPR genes for treatment with IMCIVREE® (setmelanotide) in accordance with the approved therapeutic product labeling. The POMC/PCSK1/LEPR CDx Panel is a single-site assay performed at PreventionGenetics, LLC (Marshfield, WI).

What is the Program?

This test is a companion diagnostic device intended to select adult and pediatric patients 6 years of age and older who have obesity and certain variants in POMC/PCSK1/LEPR genes for treatment with IMCIVREE® (setmelanotide) in accordance with the approved therapeutic product labeling.

Program Eligibility

  • For in vitro diagnostic use.
  • For prescription use only. This test must be ordered by a qualified medical professional in accordance with clinical laboratory regulations. The classification and interpretation of all variants identified reflects the current state of scientific understanding at the time the result report is issued.
  • When NGS does not reveal any difference from the reference sequence, or when a sequence variant is homozygous, we cannot be certain that we were able to detect both patient alleles. Occasionally, a patient may carry an allele, which does not capture or amplify, due for example to a large deletion or insertion.
  • Test reports contain no information about other portions of the gene, such as regulatory domains, deep intronic regions or any currently uncharacterized alternative exons.
  • The POMC/PCSK1/LEPR CDx Panel is not intended to detect mosaic variants.
  • We cannot be certain that the reference sequences are correct. Genome build hg19, GRCh37 (Feb2009) is used as reference for this assay.
  • Insertions and deletions larger than 18 base pairs in the variable number tandem repeat (VNTR) region in exon 3 (NM_000939.3) of the POMC gene with coordinates chr2:25,384,457-25,384,474 (GRCh37/hg19) containing repeated sequence “AGCAGCGGC” were not validated with this device and will not be reported.
  • Two runs of intronic mononucleotide repeats (e.g., (A)n or (T)n) are excluded from the analysis. The excluded regions reside in LEPR (NM_002303.5) intron 4 (chr1:66,037,998-66,038,001) and post-coding (chr1:66,096,092-66,096,098) (GRCh37/hg19).
  • Balanced translocations or inversions within a targeted gene, or large unbalanced translocations or inversions that extend beyond the genomic location of a targeted gene are not detected.
  • In nearly all cases, our ability to determine the exact copy number change within a targeted gene is limited. In particular, when we find copy excess within a targeted gene, we cannot be certain that the region is duplicated, triplicated, etc. In many duplication cases, we are unable to determine the genomic location or the orientation of the duplicated segment with respect to the gene. In particular, we often cannot determine if the duplicated segment is inserted in tandem within the gene or inserted elsewhere in the genome. Similarly, we may not be able to determine the orientation of the duplicated segment (direct or inverted), and whether it will disrupt the open reading frame of the given gene.
  • The performance of the POMC/PCSK1/LEPR CDx Panel was assessed for single nucleotide variants (SNVs), insertions and deletions <50 base pairs, and a single copy number variant (CNV; a homozygous deletion in exons 6, 7, and 8 in the LEPR gene). Due to limitations in the POMC/PCSK1/LEPR CDx Panel for CNV detection, any CNV duplication or deletion > 50 base pairs reported by the device may not be accurate other than the homozygous deletion in exons 6, 7, and 8 in the LEPR gene.
  • The accuracy of the POMC/PCSK1/LEPR CDx Panel was not assessed for PCSK1 exon 2 and LEPR exon 7.
  • The POMC/PCSK1/LEPR CDx Panel is for use only with whole blood collected in K2EDTA blood collection tubes or saliva specimens collected in DNA Genotek ORAcollect Dx™ OCD-100 saliva collection devices.
  • The assay has been validated with the Illumina NovaSeq6000.
  • By definition, there is not sufficient scientific information available to make a pathogenicity assignment to variants of uncertain significance (VUS/VOUS). All variants and these variants in particular could change classification as new scientific information becomes available, which may impact patient eligibility for IMCIVREE (setmelanotide) injection.
  • The pathogenicity assignments determined with the POMC/PCSK1/LEPR CDx Panel are intended to predict response to therapy with setmelanotide and are not intended for diagnostic purposes.

Testing

How to participate

Choose between the following testing options:

Prevention Genetics

POMC/PCSK1/LEPR CDx Panel

Genes Evaluated: LEPR, PCSK1, POMC

How To Order

Whole blood and ORAcollect-Dx™ OCD-100 assisted saliva samples are collected and shipped to the PreventionGenetics laboratory.

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More Information About This Program

  • Patients that meet the eligibility criteria may receive one test at no cost.
  • No patients, providers, and/or third-party payers (including commercial health plans and government health care programs) will be billed for the testing covered under the program.
  • The ordering physician will not receive any fees or other compensation in connection with the Sponsored Testing Program, such as for specimen collection, handling, or data reporting.
  • Patients meeting the above eligibility criteria, as well as their treating health care providers, are not required to order, purchase, prescribe, and/or obtain any other product or service from sponsor, the labs or any of their affiliates.
  • The performing labs reserve the right to rescind, revoke, or amend the program for any reason without notice.
  • Program is not valid where prohibited by law.
  • No identifiable patient data will be shared with sponsor as part of this program.

About Rhythm Pharmaceuticals

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Rhythm is a commercial-stage biopharmaceutical company committed to transforming the lives of patients and their families living with rare neuroendocrine diseases. Rhythm’s lead asset, IMCIVREE® (setmelanotide), an MC4R agonist designed to treat hyperphagia and severe obesity, is approved by the U.S. Food and Drug Administration (FDA) for chronic weight management in adult and pediatric patients 6 years of age and older with monogenic or syndromic obesity due to pro-opiomelanocortin (POMC), proprotein convertase subtilisin/kexin type 1 (PCSK1) or leptin receptor (LEPR) deficiency confirmed by genetic testing, or patients with a clinical diagnosis of Bardet-Biedl syndrome (BBS). Both the European Commission (EC) and the UK’s Medicines & Healthcare Products Regulatory Agency (MHRA) have authorized setmelanotide for the treatment of obesity and the control of hunger associated with genetically confirmed BBS or genetically confirmed loss-of-function biallelic POMC, including PCSK1, deficiency or biallelic LEPR deficiency in adults and children 6 years of age and above. Additionally, Rhythm is advancing a broad clinical development program for setmelanotide in other rare diseases, as well as investigational MC4R agonists LB54640 and RM-718, and a preclinical suite of small molecules for the treatment of congenital hyperinsulinism. Rhythm’s headquarters is in Boston, MA.

About IMCIVREE®

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Imcivree (setmelanotide) is an FDA-approved medication specifically designed to treat obesity and the control of hunger associated with genetic conditions affecting the melanocortin-4 receptor (MC4R) pathway. It targets certain genetic deficits that disrupt normal satiety signals, making it particularly effective for individuals with rare genetic disorders of obesity such as POMC, PCSK1, or LEPR deficiency. Imcivree is used under the guidance of healthcare providers to help manage weight in patients for whom other treatments have been ineffective.

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